rs218941752 SNP Detail

Summary

• ID
  rs218941752
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTATGA GTGATCTTAC
  CATAGCCCAG AGTCTACAGC CTGGCATCCC GACCTGGCTG TAGTGTGCGG TAGAGTTGGT
  TCCAGGCAGG TGATGGAGAC TAAGCACACT GGATCCTGAA GGATCCAACA GGCTGGCAGG
  CAGGGAAGGG GACACCTTGC TGCAGCCTGT GGCTACCGTT CTCCTGCCCC TGCAGAGCCT
  S
  CAGCATGCTG AGCAAGATGA GGATGGTAGC TGGCGGGGAC AGGACAGTGT CACTCTGGCT
  CCTGGGCACA CCACGTGTCA TGAGTTTTAA CTGAGATCCA GCCTAGCCTC AGAAGACACA
  CTTTTTTCCA GGGTGAAGGG AAATCGTTCC TGACACCCAA GGCCCTTGGT GCCTGCAACA
  TGGCTGTACA GCTGTTGAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322844726	CHEV_8_124315351	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218941752					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518190 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	368 bp downstream
Rr671926	regulatory region 671926	708 bp proximal
Tssr79823	transcription start site region 79823	880 bp upstream
Tssr79824	transcription start site region 79824	998 bp upstream
Tssr79825	transcription start site region 79825	1027 bp upstream
Tssr83237	transcription start site region 83237	733 bp downstream
Tssr83238	transcription start site region 83238	749 bp downstream
Tssr83239	transcription start site region 83239	763 bp downstream
Tssr83240	transcription start site region 83240	811 bp downstream
Tssr83241	transcription start site region 83241	884 bp downstream