rs218942110 SNP Detail

Summary

• ID
  rs218942110
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87193839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTCAAAG AACCTCTGAG
  TATCACCATT TTAAAGCCAG GTGACTAGAA GACATGAGGA CAACTCCTGC AAACTCCGAG
  TGTGGGACCC CCACCAGGGC AAACCTATTC TCCGAGGTTT GACACACCGG AAAGCTTTCC
  CCAGCCACCC CCTACTCCCC TCGAAATACA ACTGAGTTTC TCTACCGCCA AGGACCTGTC
  S
  TGCCTCCGAT GAATCCCGCC CACTTCGCGC CCTCAAGCCA ATCAGAGGGT GGCGTCACTC
  CCTCTCAGTT GCCATGGTGC CCGCCAAGTC CTTTCCGCCA CTTACCAGAT GTGAGCAGGC
  TGGTCCAGCC GGTGAAAGCG GGTGGCAAAG GACAGCAGCG TCACCACAGC CAACGTGGCC
  CACCACCCTG CCGCCTGGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386776115	MGP_WTSI_12_88488015	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218942110					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386776115	MGP_WTSI_12_88488015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87193839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	within coordinates
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	100 bp upstream
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	within coordinates
Rr403430	regulatory region 403430	458 bp upstream
Rr470321	regulatory region 470321	within coordinates
Rr470322	regulatory region 470322	38 bp proximal
Rr470323	regulatory region 470323	163 bp proximal
Rr470324	regulatory region 470324	420 bp proximal
Rr470325	regulatory region 470325	827 bp proximal
Tssr114506	transcription start site region 114506	84 bp upstream
Tssr114507	transcription start site region 114507	638 bp upstream
Tssr114508	transcription start site region 114508	720 bp upstream
Tssr114509	transcription start site region 114509	905 bp upstream
Tssr117156	transcription start site region 117156	353 bp downstream
Tssr117157	transcription start site region 117157	419 bp downstream
Tssr117158	transcription start site region 117158	818 bp downstream