rs218977321 SNP Detail

Summary

• ID
  rs218977321
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138103051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCTCTGTA AAGCTAAGTC AAAACTAAAA
  GAAAAGAACG CATACTTTGC ACTCTGTCTT ATCAGATGGG GAGCAAGTTT CCTACTCTCT
  TACCCTAAGA ACAAACCACT TGCTAGCTAC ATGCACTGCT AAATGGTGAT GTCAGATTCG
  R
  TTTTACTAAC TTCTCCAAAA ATACTGTAAA GGGTCCTCTT TGCAGGAAGT TAAAAAAAAA
  AAAAAAAAGG TCGTTCAAAG TCAGTGCAAT GGCTTCTTAC TTCCTTAATT CAAGTAATTA
  TGCTGTTAGC GGTTCGTCTC AATTTTCCTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320000113	CHEV_1_140071890	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218977321					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138103051 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	within coordinates
Rr396336	regulatory region 396336	875 bp upstream
Rr419677	regulatory region 419677	57 bp distal
Rr419678	regulatory region 419678	within coordinates
Tssr233	transcription start site region 233	305 bp downstream
Tssr9153	transcription start site region 9153	855 bp downstream
Tssr9154	transcription start site region 9154	315 bp upstream
Tssr9155	transcription start site region 9155	378 bp upstream
Tssr14018	transcription start site region 14018	1009 bp upstream
Tssr14019	transcription start site region 14019	974 bp upstream
Tssr14020	transcription start site region 14020	965 bp upstream
Tssr14021	transcription start site region 14021	115 bp upstream
Tssr14022	transcription start site region 14022	59 bp upstream
Tssr14023	transcription start site region 14023	2 bp upstream
Tssr14024	transcription start site region 14024	313 bp downstream
Tssr14025	transcription start site region 14025	340 bp downstream
Tssr14026	transcription start site region 14026	358 bp downstream
Tssr14027	transcription start site region 14027	379 bp downstream
Tssr14028	transcription start site region 14028	405 bp downstream
Tssr14029	transcription start site region 14029	429 bp downstream
Tssr14030	transcription start site region 14030	583 bp downstream
Tssr14031	transcription start site region 14031	600 bp downstream