rs218979157 SNP Detail

Summary

• ID
  rs218979157
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59953143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCTCCT ATGACCCTGG
  GCCCACGTGG CCCAGGGGAA GGATCCTAGC TGTTGTTGTA TGAGAGGCCT TTGAAGGACA
  GTCTCCTGGC CTGCAGCCTT CCCTCACTGT GGCTCTCTTC ACACCCAGGG AATGGCAGTG
  CCAGGCCTGG CTCTTATCTT CTGCCCAGTT GTTCTCTCTC CCTACACCTC TAAAAATGAA
  W
  TTTCTCACTT TTAATGGTGT TACTGCAAAA TACTTGGAGA GAATTTATTT CCTATTTATT
  CCTTTCAAGA GACAGGGTCT CCTGTGTTCC AGGGTGGCCT TGAGCTCACT AGCTGGAGAG
  AACCTGGGAC TTTGGATCCT CCTGCTTCTA CCTTTGGAAT GCTGGAGTTA TAAGAGAACT
  ACCACACGCA GTTTCTGTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323323892	CHEV_10_59580069	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218979157					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59953143 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Gm66809	predicted gene, 66809	1550 bp upstream
Rr219869	regulatory region 219869	858 bp proximal
Rr219870	regulatory region 219870	1858 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates
Tssr93522	transcription start site region 93522	1529 bp downstream