rs218981097 SNP Detail

Summary

• ID
  rs218981097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:9112457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGATGCCC TCGCGCACCA
  GCTCTTTCCG GTTGGCTGAG ATGTTGCTTG CTCCGCCACC ATGGACTACC ACCACGAGAC
  TCACATCGAT GGAGGCTAGG CATCAGGAAG AGGCGAGTGT CATTTTGTAC CGGTCCAAGG
  GAACCAACTC AAGTGAGCAG CAGCGTCAAA GTTGTTTCCG TTCAGTGTCG TCCGTCCCCC
  Y
  CCCCCCCCCC CCCCCGCTCA GTGAGAGTTT TGTTACAAAA CCCCAAAGCG ACCCAAGCCT
  CCCAGCATTC CTCCCCATGC TCTCCCACTC CGACCTGGCA GGGGCATCTG TGGCTCAGAA
  AGCCTGGTGT CAAGACTCCG AGCCTGCGCT TGTGCCACAG CGCTACCCCT CAGCCTCAGT
  TTCCCCAGAG AACACCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325718348	CHEV_19_9209583	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218981097					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9112457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asrgl1	asparaginase like 1			Intron
				Noncoding-Transcript-Variant
Rr543910	regulatory region 543910			within coordinates
Rr543911	regulatory region 543911			75 bp proximal
Rr543912	regulatory region 543912			533 bp proximal
Rr543913	regulatory region 543913			911 bp proximal
Rr543914	regulatory region 543914			1055 bp proximal
Tssr154969	transcription start site region 154969			61 bp upstream
Tssr158099	transcription start site region 158099			42 bp upstream
Tssr158100	transcription start site region 158100			463 bp downstream
Tssr158101	transcription start site region 158101			510 bp downstream