rs218981893 SNP Detail

Summary

• ID
  rs218981893
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127483195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGTTCC CCCAGTAACC
  AGTAGACCAC AGAGTTCATT TCTTCTCTTC CTGACCATAA TCTGGCCTTG TGATCTGTTT
  TAGCAGTGAC ACATGGTTTA ATAGACACTG TGCATCTTAC CTAGTTGGCA CAGTAAAATG
  TCCATCTTTC TGTGTTTGGT TTTCTCCTTA GGAAAATCAT CTTCTAAAAT GTCTGTTTTG
  K
  CCACACTTTT ACATGATAAT TTTGCTGGTT ATAAAATTCT AGGTTCAAGT TATTTTGTCT
  TAGATTTGTG TTAATTCCAG TGCTTTCTGA AGTATTTCTT CTTCTTTTTC CTTCTTCTTC
  TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC
  TTTTTCTTCT TCTTCTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956103	CHEV_3_127392464	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218981893					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127483195 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	994 bp upstream
Tssr35587	transcription start site region 35587	1202 bp downstream
Tssr35588	transcription start site region 35588	1745 bp downstream