rs218985411 SNP Detail

Summary

• ID
  rs218985411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90947490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTGTGT GCCTGGTGCC
  TGCAGTCTAG AAGAGGGGTG TTGGGTCCCC TGGAGCTGGA GTTACAGATG GTTGTGAGGT
  ATTGTGTGGG TGCTTGGACC GGAACCTGAG TTCTCGGCAA GAACAAGTGC TTTTAATCAC
  TGAGCCTTCT CTTCCAGCCC CAGACCAGTT CTCTGGACGA CTCGGAGATA AGCATAGCAG
  Y
  GCATACCCAG AATAGCAGCA CTTAGGTTGA GGCAGGAGGA TTGTCATTGG TTTGAGACCA
  ACCTGGATTG CTAGTTATAG CTTCAACACA CACACTCATG CACATGACTT AGGAGCAGGT
  GATATGACTC TAAAGTAACT AAAATTGGGT GGAAATCACG GCTAGGTTTC TATTGACTGG
  AAAATGCTTA TATGTGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354807936	MGP_WTSI_2_90957302	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218985411					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354807936	MGP_WTSI_2_90957302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90947490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	1515 bp distal
Cpgi11897	CpG island 11897	1931 bp proximal
Mybpc3	myosin binding protein C, cardiac	999 bp upstream
Rr560651	regulatory region 560651	1935 bp distal
Rr560652	regulatory region 560652	1872 bp distal
Rr560653	regulatory region 560653	509 bp proximal
Spi1	Spi-1 proto-oncogene	1386 bp downstream
Tssr18853	transcription start site region 18853	1974 bp downstream
Tssr18854	transcription start site region 18854	1932 bp downstream
Tssr18855	transcription start site region 18855	1755 bp downstream
Tssr18856	transcription start site region 18856	1707 bp downstream
Tssr18857	transcription start site region 18857	1591 bp downstream
Tssr18858	transcription start site region 18858	1548 bp downstream
Tssr18859	transcription start site region 18859	1443 bp downstream
Tssr18860	transcription start site region 18860	991 bp upstream
Tssr18861	transcription start site region 18861	1765 bp upstream
Tssr18862	transcription start site region 18862	1804 bp upstream
Tssr18863	transcription start site region 18863	1828 bp upstream
Tssr18864	transcription start site region 18864	1894 bp upstream
Tssr25158	transcription start site region 25158	1388 bp upstream