rs218992592 SNP Detail

Summary

• ID
  rs218992592
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84573842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGGCCA CAAAGGATTC
  AAGGACAGCC TGGATTATGG TGAGAATATC TCCAAAAATT ATCAAGGAAT GAGGGCGACA
  GTCAGTCTCA GAGGTAGGAA GCAAGGGCTA GAAATGAGGA CTTACATGAC ATAAACACAC
  ATGTATAAGC TTGCGCACAT ACACAGAGCA CATATACACA CACATAGGAA TGTATTTCAT
  W
  TTCTCCAGGG TCAAATTTCT TCATAGATTA TTTCGGGCTT GTATGCACCG GAAATATGTC
  TTCTCAAACT TACTTACACA CTTGTTTTAG GATCTTATTT AATCACTTAT TTTAATATCA
  GCCTGGGCTT ATTAATAAAT ATATAACTAA TATGTATTTA GTTGATGATA GACTCGTATT
  TTTTATTTAT TAAAGAACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261878	CHEV_16_84777199	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218992592					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84573842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	1722 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Rr392068	regulatory region 392068	1227 bp upstream