rs219001289 SNP Detail

Summary

• ID
  rs219001289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23990068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTTGTA TTTTGATGGT
  ATCCTTACTT TGGCCAATCA CGTGTTCCCA ATCTGAGTGA ACAGCTTTTT GTTCATGTCT
  CCCCCAGAAA ATGTCACACA ATAGATGGCT CAGTGGTTTA AAGGGCATTC TGTTCTGGAG
  TACTGAGGTT AGTTTCCTGA ACCTTCTCAA GAGAGGAGTC ACAGGTACCT GTAACTCCAG
  Y
  TCCAGGGTTT GGGGGGCTCC TTAGGTACCC ACATGCATGC CATACAATCA CACAAACAGA
  CACATAAATA AAAATAAGAA AACTAATATA GTTTGGATTT TTTAAATAAT AATAATAAAA
  AGAAAATGAG TAGGGACCAG TAAGACTGGC TAAGGAGCTG GGCAGTATAG GCTCTTTGGG
  GGACCATGAT GATAGGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292025	CHEV_13_23897954	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219001289					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23990068 () rs orientation: forward

Symbol	Name	Function Class
Gm11337	predicted gene 11337	1445 bp upstream
Rr475952	regulatory region 475952	1268 bp distal
Rr475953	regulatory region 475953	518 bp proximal
Slc17a2	solute carrier family 17 (sodium phosphate), member 2	908 bp upstream
Tssr118868	transcription start site region 118868	901 bp upstream
Tssr118869	transcription start site region 118869	944 bp upstream
Tssr118870	transcription start site region 118870	980 bp upstream
Tssr118871	transcription start site region 118871	1010 bp upstream