rs219010736 SNP Detail

Summary

• ID
  rs219010736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122581220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAACCC TGTCTCACAT
  AAACAAAAAG TCCAGATGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTACA
  GAAGAGAGTG TAGGACCCCT CAGAACCAAA GTGAGAGGTG TTTGCAGAAC ACCAGGCTTG
  TTACATAGTT GCTGGGTTCT GAACTCCAGT GCACAAAATT TAGCCACAGT CACCTCTTAC
  Y
  TGCTGAGCCT TCTCTCCAGC CTCCCTTTTA ATAACTTTTA TAGAAAGGTC CTGCTTTGCT
  TTACTATTGC TGTGTCAAAC AAACAAACAC AGCCTGGAGA AGAAAGGACT TCTTTCATCT
  TACACCCCAG AGAACAATTC ATCACTGAGA GAAGTCAGAG CAGAAACTTA AAAGAGGAAC
  AGGAAGCAGA AACTGAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369909467	MGP_WTSI_6_122554279	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219010736					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369909467	MGP_WTSI_6_122554279	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122581220 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	1817 bp upstream
Gdf3	growth differentiation factor 3	1142 bp downstream
Rr399899	regulatory region 399899	1749 bp downstream
Rr399900	regulatory region 399900	within coordinates
Rr638222	regulatory region 638222	1901 bp distal
Rr638223	regulatory region 638223	1327 bp distal
Rr638224	regulatory region 638224	990 bp proximal
Rr638225	regulatory region 638225	1303 bp proximal
Rr638226	regulatory region 638226	1411 bp proximal
Tssr58686	transcription start site region 58686	1556 bp downstream
Tssr62923	transcription start site region 62923	1917 bp upstream
Tssr62924	transcription start site region 62924	1861 bp upstream
Tssr62925	transcription start site region 62925	1839 bp upstream
Tssr62926	transcription start site region 62926	1149 bp upstream
Tssr62927	transcription start site region 62927	115 bp downstream