rs219011418 SNP Detail

Summary

• ID
  rs219011418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123126626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCTAGTG CAAGAAGAGG
  AGGGGAGGGG AGGAGGTTAA GAATGTGGGG GGAGAGAGGC AGCCAGCCCA CCACAAAGCT
  TCTATCAGAG ACCCCAAAAC GCACCAGCAG CTGCCTCATC TCCCCACGAG CGCGCGCGCA
  CACTCACTTC CTAAGGAGAC TCCCCCACCA CTCCCCGCAT CCTTCTTCCT CCTCCCTCCG
  Y
  CGCTCAGCAC CGAGCCCCGC AGCCCCCCAG ATCCCAGGCG AACCCCGAGC CCGCTCAGTC
  CCTTCCACGC CTTTCGGCGT TGCCTCCTCC CCACTTAAGT GTCTGAGACC CTGAGCCTCA
  CAAGAGACTG GAGGAGTAAG CTGCTTGCTT CCTTTTGCAT GCAATTTATT ATTTTTTTCC
  GGTCCTCTTG CAAAATACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530159	MGP_WTSI_5_123438572	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219011418					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530159	MGP_WTSI_5_123438572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123126626 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	791 bp upstream
Cpgi16565	CpG island 16565	within coordinates
Cpgi16566	CpG island 16566	499 bp proximal
Gm44574	predicted gene 44574	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	within coordinates
Rr620030	regulatory region 620030	41 bp distal
Rr620031	regulatory region 620031	within coordinates
Rr620032	regulatory region 620032	526 bp proximal
Rr620033	regulatory region 620033	586 bp proximal
Rr620034	regulatory region 620034	733 bp proximal
Rr620035	regulatory region 620035	1250 bp proximal
Rr620036	regulatory region 620036	1753 bp proximal
Tssr48729	transcription start site region 48729	951 bp downstream
Tssr48730	transcription start site region 48730	679 bp upstream
Tssr48731	transcription start site region 48731	702 bp upstream
Tssr48732	transcription start site region 48732	727 bp upstream
Tssr48733	transcription start site region 48733	785 bp upstream
Tssr48734	transcription start site region 48734	1012 bp upstream
Tssr48735	transcription start site region 48735	1155 bp upstream
Tssr48736	transcription start site region 48736	1181 bp upstream
Tssr48737	transcription start site region 48737	1355 bp upstream
Tssr53168	transcription start site region 53168	1116 bp upstream
Tssr53169	transcription start site region 53169	37 bp upstream
Tssr53170	transcription start site region 53170	120 bp downstream
Tssr53171	transcription start site region 53171	480 bp downstream
Tssr53172	transcription start site region 53172	523 bp downstream
Tssr53173	transcription start site region 53173	697 bp downstream
Tssr53174	transcription start site region 53174	720 bp downstream
Tssr53175	transcription start site region 53175	1722 bp downstream
Tssr53176	transcription start site region 53176	1841 bp downstream
Tssr53177	transcription start site region 53177	1897 bp downstream
Tssr53178	transcription start site region 53178	1914 bp downstream
Tssr53179	transcription start site region 53179	1955 bp downstream
Tssr53180	transcription start site region 53180	1970 bp downstream