rs219016171 SNP Detail

Summary

• ID
  rs219016171
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100750790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGATTAC CAAGGTCTTT
  CTTGCTCGGC TTTAAGGGGG AAGGTCATGT GGTGGAAGTC ATGCTAGGTG GGAGACCTTA
  GAAGTAGGCT TGGCTTCTCT GGGATCGCCA GTCCTTCTAA AGTTTTGACT CTGCAGGCAT
  AGAAGCCACA TGCACCCTTA CCTGAACATG CGCGTGTACA CACACACACA CACACACACA
  M
  AACTTTGTAA ATCTAGAGAC AGACTAGTTG ACTCCAGAGG TAGGAGCCAT CTCTAGGTAG
  ATTTTTTTTT CTTTTCTTCC TCCCCCTCTT TTATTTTATT TATTTATTTT TAACAGATGA
  TAAAACTGAG GCCCTAGTTA GGGATTTTCA GAGTTTGGGA CTTCCCGGCA CCCTCTGGCT
  GCTCCAGTTC AGCTGTCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384467510	MGP_WTSI_11_100721278	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219016171					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384467510	MGP_WTSI_11_100721278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100750790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	229 bp proximal
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	298 bp distal
Rr456793	regulatory region 456793	30 bp proximal
Rr456794	regulatory region 456794	165 bp proximal
Rr456795	regulatory region 456795	562 bp proximal
Stat5a	signal transducer and activator of transcription 5A	within coordinates
Tssr104969	transcription start site region 104969	481 bp downstream
Tssr104970	transcription start site region 104970	458 bp downstream
Tssr104971	transcription start site region 104971	79 bp downstream
Tssr104972	transcription start site region 104972	147 bp upstream
Tssr104973	transcription start site region 104973	214 bp upstream
Tssr104974	transcription start site region 104974	306 bp upstream
Tssr104975	transcription start site region 104975	328 bp upstream
Tssr104976	transcription start site region 104976	362 bp upstream
Tssr104977	transcription start site region 104977	385 bp upstream
Tssr104978	transcription start site region 104978	454 bp upstream
Tssr104979	transcription start site region 104979	483 bp upstream
Tssr104980	transcription start site region 104980	683 bp upstream