rs219020654 SNP Detail

Summary

• ID
  rs219020654
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCAGCTC GAGCCGCCCA
  AGCTTGGACG ACCAGAGAGG GCGCCGAGAG GACGGCTTTG GGGGCGAGGC AGTGAGGGAA
  ACCGCGGTGG ACCGCTGCAA CGTGAAGTGT AGGATGTTGG CAACTTTCGG GACCCGCATG
  AGGTTTGGGT ATCAGAGTGG GTGGAGAAGC CCTGGGAGAC AGACTGGAGG GCTGGACGGA
  R
  AAAGCACCCT GCAAGCCGTG AGGAACACCC CATCTTTCCG GGTCCTGGGC TGGCAGCCAA
  GGCTAGGAGA CCAGGGACGA GACCAGCGGA CCGTTACGGC GAGGCCCCTA GGTGGACCCG
  GCCAACCGTG TGCAAAGGGG CTGCGGGAGG GCGGTGTCGC CGCGTGAGGA CCGTCCTCGG
  CAGTGCAGGG ATGGGCGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351452106	MGP_WTSI_1_133423400	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219020654					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452106	MGP_WTSI_1_133423400	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	1080 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	459 bp upstream
Rr396287	regulatory region 396287	770 bp upstream
Rr418128	regulatory region 418128	1690 bp distal
Rr418129	regulatory region 418129	189 bp distal
Rr418130	regulatory region 418130	574 bp distal
Rr418131	regulatory region 418131	within coordinates
Rr418132	regulatory region 418132	514 bp proximal
Rr418133	regulatory region 418133	1311 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	within coordinates
Tssr8627	transcription start site region 8627	1544 bp downstream
Tssr8628	transcription start site region 8628	1370 bp downstream
Tssr8629	transcription start site region 8629	1035 bp upstream
Tssr8630	transcription start site region 8630	1078 bp upstream
Tssr8631	transcription start site region 8631	1157 bp upstream
Tssr8632	transcription start site region 8632	1538 bp upstream
Tssr13589	transcription start site region 13589	1661 bp upstream
Tssr13590	transcription start site region 13590	1591 bp upstream
Tssr13591	transcription start site region 13591	1564 bp upstream
Tssr13592	transcription start site region 13592	1472 bp upstream
Tssr13593	transcription start site region 13593	1395 bp upstream
Tssr13594	transcription start site region 13594	1285 bp upstream
Tssr13595	transcription start site region 13595	1238 bp upstream
Tssr13596	transcription start site region 13596	1205 bp upstream
Tssr13597	transcription start site region 13597	976 bp upstream
Tssr13598	transcription start site region 13598	275 bp upstream
Tssr13599	transcription start site region 13599	233 bp upstream
Tssr13600	transcription start site region 13600	78 bp upstream
Tssr13601	transcription start site region 13601	443 bp downstream
Tssr13602	transcription start site region 13602	479 bp downstream
Tssr13603	transcription start site region 13603	700 bp downstream