rs219020742 SNP Detail

Summary

• ID
  rs219020742
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41291123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGACTA AATACTAACT
  TTTTATGCAG ATAATTTAGC TACCAAACAT TTTCATGCAT TTTACAGGCT TAAGTTTTAA
  CCTAGAAAAA TCACTTGGCT CCAAGTGGCT AACTATAATT TACTTCCAAG GTTACATCTA
  AGTAAAAAAA TATATATATA CTCATATATA ACATATATGT ATATATATTC ATATATACAT
  G
  CACACACACA TATATATACA CAGTCTAAGT TTTTCTCCTT TTTCTCCTTT TCTGGCTATT
  TTCCCCCTAC TCTGGTTGGA GTCTAAGACT CTTTACTATT TTTAGAATTT GCTAAATACT
  CAGCCTTTCT GTTTTAAAAT GATTTTAAGT CAAAGGCGAC TGCATCTACA TGCAGAGACC
  ACGCTTTATT CAGAAGACAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ
ss377337442	MGP_WTSI_9_41187910	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ
rs219020742					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377337442	MGP_WTSI_9_41187910	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41291123 () rs orientation: forward

Symbol	Name	Function Class
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Tssr84503	transcription start site region 84503	1363 bp downstream