rs219023470 SNP Detail

Summary

• ID
  rs219023470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95722660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTGCATA ACCTCCTCTG
  CCCAGTCTTT CAAACGGACT CAGGATCCCC CAATCCGCAT GCCAGTACCA GATTCCTCGC
  GGCAGACCTA TGATGCTCTC AGAAGACAGC TCTAGGTCTT GATCTTGCTT CAGCCAACGC
  AACCCTACAC TACCGCTGCG CTGGCTGCGC CTTGCTTCCT TCCCCCTCTC CACCCCCACC
  Y
  CACCCCCGCC CACCAGACAC CCCCCACCCA CCCAAAGGAA GAAAAAGTCA GAAGGAACTA
  CCGCCTCCTG CTGGTAGAAC GAGGTAGAAG AACCGACCAC TGACCTCGGA GAGTGTGAAA
  AATCCTAGCA CTCCAGCAAG AGACCAGGGA CTTCACCAAA GTCGTCCCCT CCCCCCCCGC
  ACCCCTCCCC CCTTGCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss384356221	MGP_WTSI_11_95693148	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs219023470					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384356221	MGP_WTSI_11_95693148	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95722660 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	269 bp distal
Cpgi3604	CpG island 3604	1837 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr369341	regulatory region 369341	1354 bp upstream
Rr455202	regulatory region 455202	1132 bp distal
Rr455203	regulatory region 455203	58 bp proximal
Tssr3654	transcription start site region 3654	1290 bp downstream
Tssr104394	transcription start site region 104394	1066 bp downstream
Tssr104395	transcription start site region 104395	497 bp downstream
Tssr104396	transcription start site region 104396	461 bp downstream
Tssr104397	transcription start site region 104397	296 bp downstream
Tssr110283	transcription start site region 110283	11 bp upstream