rs219033928 SNP Detail

Summary

• ID
  rs219033928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127485165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGCTGT TACCAGTTAC
  ACAGCAAGGG GCACAGTAGG GACATAATGT CAGCTGGTCC CTGGGGGCAC AGCAAGCACA
  TGATGTCAGC TGGTCCCTGG AGGCACAGTG GGCACGTGAT ATCAGATGGT CCCTGGCTCC
  TCCAGTAAGC AGCACCAACC CTAGACCTTC CGAGGCAGAA CTCTGATCTG ATGTCATTTC
  R
  TCACATCCGC AGGGTCTATA GAAGTCAGGC AGCACTGCTC TAGAGCCCCA GTCACTGCTC
  ATTTTTTTAT GAATGGATTG AAAGGAGACT GAAAGACTTG ACTGTCATTT GCCTAGCAAG
  TGCATAACTT TTGAAACTTA AGTTTTTAAA GGTATGTTTC CCTTTTACTT CACTTATCTT
  GCCATGACCT CAGCAACAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956120	CHEV_3_127394434	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219033928					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127485165 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Gm16238	predicted gene 16238	419 bp downstream
Tssr35587	transcription start site region 35587	733 bp upstream
Tssr35588	transcription start site region 35588	212 bp upstream
Tssr35589	transcription start site region 35589	1030 bp downstream