rs219051336 SNP Detail

Summary

• ID
  rs219051336
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:73947939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTATACTA AGGGTGCACT
  TCGGTTGAGG TCAGTTATTT TGATCACGCT TCTCACCACA AGCAATGCTC ATTTTCTAGA
  ACGATCGTCA GTACCAAAAA TAAATAAATA AGGTCGAACC TAAAGCCACA ACAAACGCAA
  CACCTGACTC TGGGTTGGTT ATGAAAAGCG TTAAGAGTCA CCTGCCAATC CCGGTGCACA
  K
  ATGCCATTTC ATAAGAATGG ACAGAACCAC GCCAATCTTG GAACTTTTGC CTGCCACAAC
  TCTTTCTATT AAAATAAGGT ACACACACAC ATGCACACAT CCCAACTCCT GTGCCTCCCT
  GAGCTCGGTT GGGAAAGAAA TCTTGCTAAA GAGGGTTTGA ACCACAAAAT AAGTCTTTCC
  CAAGCGCAGT GGGAAAGGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401209238	MGP_WTSI_18_73974522	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219051336					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401209238	MGP_WTSI_18_73974522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:73947939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10208	CpG island 10208	within coordinates
Gm58443	predicted gene, 58443	689 bp upstream
Gm58445	predicted gene, 58445	1097 bp downstream
Me2	malic enzyme 2, NAD(+)-dependent, mitochondrial	within coordinates
Rr353118	regulatory region 353118	within coordinates
Rr405736	regulatory region 405736	562 bp upstream
Tssr153885	transcription start site region 153885	562 bp downstream
Tssr153886	transcription start site region 153886	602 bp downstream
Tssr153887	transcription start site region 153887	835 bp downstream
Tssr153888	transcription start site region 153888	887 bp downstream
Tssr153889	transcription start site region 153889	1635 bp downstream