rs219054828 SNP Detail

Summary

• ID
  rs219054828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95242868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTCCCAT AACTACACAC
  TACCGTTACT TAATGTCCTT AAATCCTCAA AACGAAATGT GGATTTTTAA AAAATAAGTA
  CTTGTAAATG GAAAGCCAAC ATGGCGTGTC TTAAGTGGTT GATTAAAATG GTACGGTGTT
  TCTGTGTCGC CCAAACAATC TTATGGAATC TGTTTTTTTT ACAAGTCTTC CTTAGCTCCT
  R
  CTTTACATCT GTTTTCCAAA TAACACATTC TCTTACAAGT GTATGAAATA CAAAATATTT
  ACTGGTAAGG CTTGAAATTC TACATTGGAA CTGATATCAA GAAAATATGT CTTGTCACAT
  TTTAGTGTTG TATATATTCT TAAAAAGAAT CAGAAAAGGG TATTAAAGTG CACCCTTTTC
  CAAGTTGATA TGTTTTTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350554919	MGP_WTSI_1_97211720	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219054828					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350554919	MGP_WTSI_1_97211720	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95242868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	767 bp distal
Fam174a	family with sequence similarity 174, member A	within coordinates
Rr29863	regulatory region 29863	67 bp distal
Rr396183	regulatory region 396183	1481 bp downstream
Tssr8214	transcription start site region 8214	1466 bp downstream
Tssr8215	transcription start site region 8215	1439 bp downstream
Tssr8216	transcription start site region 8216	1043 bp downstream
Tssr8217	transcription start site region 8217	1021 bp downstream
Tssr8218	transcription start site region 8218	1000 bp downstream
Tssr8219	transcription start site region 8219	982 bp downstream
Tssr13058	transcription start site region 13058	1071 bp upstream