rs219060889 SNP Detail

Summary

• ID
  rs219060889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17693893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGAGAC ACAGCTTTAA
  GACTCCTGGA AACCTTGTTT ACGTCCTGGA AATCTTGATT GCAACCGAAT TCTGACTCCA
  CTTTAAGGTA GACCTAGGAA CGCTTTGGGC CTCAGTTTCC CTCCGTCTAT CACCCCAGGA
  CCTGGCAACT GTTGCAGGCT CCCCCCCCAG ACATTACAAA GTGTGTGGAG CACGCCCGGC
  Y
  CTCGGAAGCG CTCTACACCC GCGAGCTGTT ACGTCAGTGG GTCCCTCGGC GGCGCCCGGG
  CTGTCCTCCT AAAATACTAG TACAAGAAGT ATAAATGGCC CGGGAGAGTG CAGGGACCGG
  GCCCACGTGA CCGCTCCACG AAGGCCACCG GCGGGGGCTC GGAGCGCAGG CCGCGCGCTT
  TCCCGCCGCA TCCGGGCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367532690	MGP_WTSI_6_17643894	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	C	T	C	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219060889					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	C	T	C	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367532690	MGP_WTSI_6_17643894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17693893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	within coordinates
Gm55211	predicted gene, 55211	337 bp downstream
Gm55212	predicted gene, 55212	43 bp upstream
Gm55213	predicted gene, 55213	1008 bp upstream
Gm55215	predicted gene, 55215	1460 bp upstream
Rr626833	regulatory region 626833	950 bp distal
Rr626834	regulatory region 626834	within coordinates
Rr626835	regulatory region 626835	650 bp proximal
Rr626836	regulatory region 626836	821 bp proximal
St7	suppression of tumorigenicity 7	within coordinates
Tssr55085	transcription start site region 55085	276 bp downstream
Tssr55086	transcription start site region 55086	11 bp upstream
Tssr55087	transcription start site region 55087	71 bp upstream
Tssr55088	transcription start site region 55088	111 bp upstream
Tssr55089	transcription start site region 55089	157 bp upstream
Tssr55090	transcription start site region 55090	276 bp upstream
Tssr59909	transcription start site region 59909	801 bp downstream