rs219063257 SNP Detail

Summary

• ID
  rs219063257
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96678394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAAAGGC ATCCAGAACG
  GGTGGGTTGT CGCCTGGTTT TGGAGGCTTG ACCCAAGTAT TTTTTCAGGA AGAATCGGTC
  TCTTTTGACT AATTTTTATA TAACATTGTG AAACTAACCC TCTTTTTCTT TTGTCTTAGT
  TTTTTGAACA GAAAAGTTGT CACTGTTTCG GGGTTTTTTT GATTTTTGGT TTGTTTGTTT
  K
  TTTTTTTTTT TAAGACAAGC TCTCACTCTG TAACCTAGGC TACATAGTCT AAACTGCGCT
  TTTTTTTTTT TTTTTTTTTT TGGGTTTGCT GTTGTGTTTG TTTGTTTGTT TGAGACAGGG
  TTTCTCTGTG TAGCCCTGGC TCTCCTGGAA CTCACTCTGT AGAACAGGCT GGTCTTGAAC
  TCAGAAATTC TCCTGCCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ
ss384377111	MGP_WTSI_11_96648882	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	G	T	T	G	T	G	G	G	G	G	G	G	G	T	T	G	T	G	G	G	G	T	G	G	G	T	G	G	T	T	T	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ
rs219063257					SNP	G	T	T	G	T	T	G	T	G	G	G	G	G	G	G	G	T	T	G	T	G	G	G	G	T	G	G	G	T	G	G	T	T	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384377111	MGP_WTSI_11_96648882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96678394 () rs orientation: forward

Symbol	Name	Function Class
Cbx1	chromobox 1	1559 bp upstream
Cpgi3668	CpG island 3668	1272 bp proximal
Rr455508	regulatory region 455508	1139 bp proximal
Rr455509	regulatory region 455509	1692 bp proximal
Tssr104569	transcription start site region 104569	1550 bp upstream
Tssr104570	transcription start site region 104570	1581 bp upstream
Tssr104571	transcription start site region 104571	1645 bp upstream
Tssr104572	transcription start site region 104572	1667 bp upstream
Tssr110346	transcription start site region 110346	1420 bp downstream