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rs219065986 SNP Detail
Summary
  • ID
    rs219065986
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128472 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTTTC TCTTCCCATC CTTCTACGAT
W
CACCTATCCC CCCTCCACCT GTCAT                                      

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198931 CHEV_7_51734418 CHEVERUD SCREENING_POP f SNP T A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs219065986 SNP T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128472 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1669 bp downstream
Tssr2225 transcription start site region 2225 1629 bp downstream
Tssr2226 transcription start site region 2226 1103 bp downstream
Tssr2227 transcription start site region 2227 28 bp downstream
Tssr2228 transcription start site region 2228 1030 bp upstream
Tssr2229 transcription start site region 2229 1306 bp upstream
Tssr2230 transcription start site region 2230 1485 bp upstream
Tssr2231 transcription start site region 2231 1618 bp upstream
Tssr2232 transcription start site region 2232 1793 bp upstream
Tssr2233 transcription start site region 2233 1826 bp upstream
Tssr2234 transcription start site region 2234 1985 bp upstream
Tssr66236 transcription start site region 66236 1979 bp downstream
Tssr66237 transcription start site region 66237 1958 bp downstream
Tssr66238 transcription start site region 66238 1939 bp downstream
Tssr66239 transcription start site region 66239 1888 bp downstream
Tssr66240 transcription start site region 66240 1807 bp downstream
Tssr66241 transcription start site region 66241 1795 bp downstream
Tssr66242 transcription start site region 66242 1715 bp downstream
Tssr66243 transcription start site region 66243 1701 bp downstream
Tssr66244 transcription start site region 66244 1650 bp downstream
Tssr66245 transcription start site region 66245 1588 bp downstream
Tssr66246 transcription start site region 66246 1560 bp downstream
Tssr66247 transcription start site region 66247 1513 bp downstream
Tssr66248 transcription start site region 66248 1472 bp downstream
Tssr66249 transcription start site region 66249 1449 bp downstream
Tssr66250 transcription start site region 66250 1430 bp downstream
Tssr66251 transcription start site region 66251 1405 bp downstream
Tssr66252 transcription start site region 66252 1374 bp downstream
Tssr66253 transcription start site region 66253 1346 bp downstream
Tssr66254 transcription start site region 66254 1298 bp downstream
Tssr66255 transcription start site region 66255 1271 bp downstream
Tssr66256 transcription start site region 66256 1222 bp downstream
Tssr66257 transcription start site region 66257 1211 bp downstream
Tssr66258 transcription start site region 66258 1168 bp downstream
Tssr66259 transcription start site region 66259 1132 bp downstream
Tssr66260 transcription start site region 66260 1025 bp downstream
Tssr66261 transcription start site region 66261 1004 bp downstream
Tssr66262 transcription start site region 66262 997 bp downstream
Tssr66263 transcription start site region 66263 985 bp downstream
Tssr66264 transcription start site region 66264 961 bp downstream
Tssr66265 transcription start site region 66265 918 bp downstream
Tssr66266 transcription start site region 66266 901 bp downstream
Tssr66267 transcription start site region 66267 864 bp downstream
Tssr66268 transcription start site region 66268 848 bp downstream
Tssr66269 transcription start site region 66269 812 bp downstream
Tssr66270 transcription start site region 66270 777 bp downstream
Tssr66271 transcription start site region 66271 745 bp downstream
Tssr66272 transcription start site region 66272 693 bp downstream
Tssr66273 transcription start site region 66273 675 bp downstream
Tssr66274 transcription start site region 66274 670 bp downstream
Tssr66275 transcription start site region 66275 650 bp downstream
Tssr66276 transcription start site region 66276 630 bp downstream
Tssr66277 transcription start site region 66277 610 bp downstream
Tssr66278 transcription start site region 66278 566 bp downstream
Tssr66279 transcription start site region 66279 521 bp downstream
Tssr66280 transcription start site region 66280 499 bp downstream
Tssr66281 transcription start site region 66281 459 bp downstream
Tssr66282 transcription start site region 66282 442 bp downstream
Tssr66283 transcription start site region 66283 428 bp downstream
Tssr66284 transcription start site region 66284 416 bp downstream
Tssr66285 transcription start site region 66285 402 bp downstream
Tssr66286 transcription start site region 66286 363 bp downstream
Tssr66287 transcription start site region 66287 327 bp downstream
Tssr66288 transcription start site region 66288 302 bp downstream
Tssr66289 transcription start site region 66289 220 bp downstream
Tssr66290 transcription start site region 66290 182 bp downstream
Tssr66291 transcription start site region 66291 156 bp downstream
Tssr66292 transcription start site region 66292 124 bp downstream
Tssr66293 transcription start site region 66293 102 bp downstream
Tssr66294 transcription start site region 66294 78 bp downstream
Tssr66295 transcription start site region 66295 184 bp upstream
Tssr66296 transcription start site region 66296 317 bp upstream
Tssr66297 transcription start site region 66297 360 bp upstream
Tssr66298 transcription start site region 66298 385 bp upstream
Tssr66299 transcription start site region 66299 454 bp upstream
Tssr66300 transcription start site region 66300 461 bp upstream
Tssr66301 transcription start site region 66301 485 bp upstream
Tssr66302 transcription start site region 66302 499 bp upstream
Tssr66303 transcription start site region 66303 540 bp upstream
Tssr66304 transcription start site region 66304 548 bp upstream
Tssr66305 transcription start site region 66305 558 bp upstream
Tssr66306 transcription start site region 66306 592 bp upstream
Tssr66307 transcription start site region 66307 649 bp upstream
Tssr66308 transcription start site region 66308 702 bp upstream
Tssr66309 transcription start site region 66309 723 bp upstream
Tssr66310 transcription start site region 66310 761 bp upstream
Tssr66311 transcription start site region 66311 838 bp upstream
Tssr66312 transcription start site region 66312 854 bp upstream
Tssr66313 transcription start site region 66313 875 bp upstream
Tssr66314 transcription start site region 66314 883 bp upstream
Tssr66315 transcription start site region 66315 903 bp upstream
Tssr66316 transcription start site region 66316 962 bp upstream
Tssr66317 transcription start site region 66317 974 bp upstream
Tssr66318 transcription start site region 66318 1019 bp upstream
Tssr66319 transcription start site region 66319 1042 bp upstream
Tssr66320 transcription start site region 66320 1069 bp upstream
Tssr66321 transcription start site region 66321 1087 bp upstream
Tssr66322 transcription start site region 66322 1107 bp upstream
Tssr66323 transcription start site region 66323 1153 bp upstream
Tssr66324 transcription start site region 66324 1182 bp upstream
Tssr66325 transcription start site region 66325 1212 bp upstream
Tssr66326 transcription start site region 66326 1253 bp upstream
Tssr66327 transcription start site region 66327 1267 bp upstream
Tssr66328 transcription start site region 66328 1283 bp upstream
Tssr66329 transcription start site region 66329 1322 bp upstream
Tssr66330 transcription start site region 66330 1341 bp upstream
Tssr66331 transcription start site region 66331 1355 bp upstream
Tssr66332 transcription start site region 66332 1376 bp upstream
Tssr66333 transcription start site region 66333 1424 bp upstream
Tssr66334 transcription start site region 66334 1436 bp upstream
Tssr66335 transcription start site region 66335 1445 bp upstream
Tssr66336 transcription start site region 66336 1454 bp upstream
Tssr66337 transcription start site region 66337 1472 bp upstream
Tssr66338 transcription start site region 66338 1528 bp upstream
Tssr66339 transcription start site region 66339 1579 bp upstream
Tssr66340 transcription start site region 66340 1624 bp upstream
Tssr66341 transcription start site region 66341 1669 bp upstream
Tssr66342 transcription start site region 66342 1731 bp upstream
Tssr66343 transcription start site region 66343 1763 bp upstream
Tssr66344 transcription start site region 66344 1908 bp upstream
Tssr66345 transcription start site region 66345 1941 bp upstream
Tssr66346 transcription start site region 66346 1997 bp upstream
Tssr72199 transcription start site region 72199 1565 bp upstream
Tssr72200 transcription start site region 72200 607 bp upstream
Tssr72201 transcription start site region 72201 97 bp upstream
Tssr72202 transcription start site region 72202 745 bp downstream
Tssr72203 transcription start site region 72203 1131 bp downstream
Tssr72204 transcription start site region 72204 1727 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory