rs219068984 SNP Detail

Summary

• ID
  rs219068984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55241370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGATCC ATGACGTCAA
  AAACAACAAT TAGACTAGTT GGTGTGCTCC TGCTATGGGA GATGGGATAA AACAGGACTT
  AGAAACCAGA GATAGATATC CTAGATAGAC ATCTGAGGCT TGGCATGCAC TTTCCCACCT
  GAGGTTTTCC TGGGGGGGGG GGGGACGCCG GGGGGGGGGG GGAGAAAAGT CTCCTGGGAA
  R
  CTGAGCTCCA AAATTAAACA AAAGCTAGAG GCACCTCTAT CCGTCCTTCC CAAGGGGTCA
  GACCTGCAGG TCTCTGAGGT GTGGCACCGG TTTGTTTTTC CTGGTCTTTA TAGCAGGGGT
  GGGTGGGTAT GGGGTGCTCT CTGCACAAAG AAGGAATCCT AAGGTAGGCT AGCACTCTAG
  TGAAGTCTTC ACCTTGAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss402836608	MGP_WTSI_19_55327428	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs219068984					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402836608	MGP_WTSI_19_55327428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55241370 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	within coordinates
Cpgi11077	CpG island 11077	1077 bp proximal
Rr363563	regulatory region 363563	169 bp distal
Rr363564	regulatory region 363564	30 bp proximal
Rr370538	regulatory region 370538	946 bp upstream
Rr406037	regulatory region 406037	1697 bp upstream
Tssr5558	transcription start site region 5558	1095 bp downstream
Tssr157068	transcription start site region 157068	1035 bp downstream
Tssr157069	transcription start site region 157069	994 bp downstream
Tssr157070	transcription start site region 157070	975 bp downstream
Tssr157071	transcription start site region 157071	703 bp upstream
Tssr157072	transcription start site region 157072	755 bp upstream
Tssr157073	transcription start site region 157073	962 bp upstream
Tssr157074	transcription start site region 157074	1028 bp upstream
Tssr157075	transcription start site region 157075	1043 bp upstream