rs219070565 SNP Detail

Summary

• ID
  rs219070565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGATTCTT GCCAAGGCTG
  AGAAGGCTCT GCTGAGGACC ACCATCACAC ACTTGGAGTC TAGGATCTGC TCTAGACTCA
  TTTATCCCCT TAGGTGACAT GAGATTTTTC TGGGATCTTA AAAAACAAAA CAAAACAAAA
  AAACCAAAAA CTCTATTGAC TTGAAGCACA AACCCCTTTG GTGACACAAA GTCCCTTGAA
  R
  TGAAATGAGG CTCCTAATAG TCCACATTTA TATAAATGCC TGATTAAAGG ACACACTGAA
  GAAAAAACCA TCAGGGATGT TGAGTGACAT CCAGCAATGT ATCACTTTTT AAAATCCATA
  ATAATCCTTT ATCCCAAATA TATCGAAGCC CAAAGATTGT TGCTAAAGGA TTGGGAATTT
  GCATTGTGCT AAGACAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072549	MGP_WTSI_11_83390212	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219070565					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072549	MGP_WTSI_11_83390212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467536 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	1916 bp proximal
Tssr103715	transcription start site region 103715	1980 bp downstream
Tssr103716	transcription start site region 103716	1344 bp downstream
Tssr109681	transcription start site region 109681	1991 bp upstream
Tssr109682	transcription start site region 109682	1716 bp upstream
Tssr109683	transcription start site region 109683	1668 bp upstream
Tssr109684	transcription start site region 109684	1642 bp upstream
Tssr109685	transcription start site region 109685	1601 bp upstream
Tssr109686	transcription start site region 109686	1532 bp upstream
Tssr109687	transcription start site region 109687	1478 bp upstream
Tssr109688	transcription start site region 109688	1437 bp upstream
Tssr109689	transcription start site region 109689	1395 bp upstream
Tssr109690	transcription start site region 109690	1386 bp upstream
Tssr109691	transcription start site region 109691	1372 bp upstream
Tssr109692	transcription start site region 109692	1344 bp upstream
Tssr109693	transcription start site region 109693	1227 bp upstream
Tssr109694	transcription start site region 109694	800 bp upstream
Tssr109695	transcription start site region 109695	752 bp upstream
Tssr109696	transcription start site region 109696	237 bp downstream
Tssr109697	transcription start site region 109697	427 bp downstream
Tssr109698	transcription start site region 109698	1710 bp downstream
Tssr109699	transcription start site region 109699	1757 bp downstream
Tssr109700	transcription start site region 109700	1786 bp downstream
Tssr109701	transcription start site region 109701	1819 bp downstream
Tssr109702	transcription start site region 109702	1876 bp downstream
Tssr109703	transcription start site region 109703	1886 bp downstream
Tssr109704	transcription start site region 109704	1910 bp downstream