rs219080156 SNP Detail

Summary

• ID
  rs219080156
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCAGATA CCTTTTAAAA
  ATATTTATTC TCGAGAAAGA TGAATAGTGA GCTCCTGTGT GATGACCACA TAAAGGGAGT
  TCACAGAAGG ACATGAGCGA GTGTAAATGA AGCGTCCACA GTGTGAGACT GACACTTTCT
  GACTGCGTCA ACCGGAGTCT ATGTGGGGAC CATGACAGAC ACTTGCCAGT CAACAGAAGT
  M
  AAATCCAAAG GGTGAAACGT CAAAAATAAG ACCATGAAGA CTTTTTCTAC AAGAGCAGGT
  AGGTAAGTTA CAGTGGGGCC GATGCCTTGT GTAGTTTGAG TCCAGCCTTC GCCTCTATGG
  AGAGCTTGAA AACTGACATC ATTCTAACTG TCTAACTGTC ACCTTCTCAA GGTTGGAAGC
  TGCCCATTTA TCACCAAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850241	CHEV_3_100720334	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219080156					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823727 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1191 bp downstream
Rr581925	regulatory region 581925	432 bp proximal
Rr581926	regulatory region 581926	526 bp proximal