rs219084249 SNP Detail

Summary

• ID
  rs219084249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66212426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGATCGG GGAGACCGGC
  TGGGTCTCTG TGTGGGTCAC CTGGCCTTCT TGTCATCTCC CTGAAGGATG CTCTGGAGGA
  CACTAGGGAT TCTGAAATGA AGCTGAAGGC ATTCCCGGAA GTGTGTAACG AGACCATGAT
  GGCCCTCTGG GAGGAGTGCA AGCCCTGCCT GAAGCATACC TGCATGAAGT TCTATGCACG
  Y
  GTCTGCAGGA GCGGCTCAGG GCTGGTCGGC CAGCAGGTGA GAAGGAGAGA TGTCCACAGC
  CTGGGTTCTG GATGGGGAAT GTGGAGAATC CATGAAATAG GCCTCATTCC ATATGCTGGG
  TACAGTTGAT TAGCATTGCT TGACTGCACA TCGTTCTAGT GTCATGGTCG ATTGGTGATG
  TCTGCTTGGC AGGTACCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367411	MGP_WTSI_14_66593814	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219084249					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367411	MGP_WTSI_14_66593814	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66212426 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126263	transcription start site region 126263	1650 bp downstream
Tssr126264	transcription start site region 126264	1609 bp downstream
Tssr126265	transcription start site region 126265	1581 bp downstream
Tssr126266	transcription start site region 126266	1542 bp downstream
Tssr126267	transcription start site region 126267	715 bp downstream
Tssr126268	transcription start site region 126268	61 bp downstream
Tssr126269	transcription start site region 126269	within coordinates
Tssr126270	transcription start site region 126270	605 bp upstream
Tssr126271	transcription start site region 126271	623 bp upstream
Tssr126272	transcription start site region 126272	648 bp upstream
Tssr126273	transcription start site region 126273	675 bp upstream
Tssr126274	transcription start site region 126274	719 bp upstream
Tssr126275	transcription start site region 126275	728 bp upstream
Tssr126276	transcription start site region 126276	761 bp upstream
Tssr126277	transcription start site region 126277	826 bp upstream
Tssr126278	transcription start site region 126278	862 bp upstream
Tssr126279	transcription start site region 126279	1923 bp upstream
Tssr126280	transcription start site region 126280	1953 bp upstream
Tssr129260	transcription start site region 129260	1618 bp upstream
Tssr129261	transcription start site region 129261	1579 bp upstream
Tssr129262	transcription start site region 129262	1566 bp upstream
Tssr129263	transcription start site region 129263	1550 bp upstream
Tssr129264	transcription start site region 129264	1497 bp upstream
Tssr129265	transcription start site region 129265	83 bp upstream
Tssr129266	transcription start site region 129266	50 bp upstream
Tssr129267	transcription start site region 129267	34 bp upstream
Tssr129268	transcription start site region 129268	13 bp downstream
Tssr129269	transcription start site region 129269	721 bp downstream
Tssr129270	transcription start site region 129270	742 bp downstream
Tssr129271	transcription start site region 129271	786 bp downstream
Tssr129272	transcription start site region 129272	1958 bp downstream