rs219090902 SNP Detail

Summary

• ID
  rs219090902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69557441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCATGC ACTCCAATCC
  TAGCACAGGA GGCCGAAGGC AGATGTAAGA GGTCAGCTTA GCCTATTTAT TTAGTTGCAG
  GACAGGAAGA GCTACAGAAC AACCATCTCC CTACATCCCC AAGGTGAGTT GACACCTACA
  TCATCTGGGC TAGGCCTAAC CAACCAGTTG AATTTTTTTT TTTTGGTTTT TCAAGACAGG
  Y
  ATTTTGTGTA GCCTTGGCTG TCCTGGAACT CACTTTTGTA GACCAGGCTA GCCTCGAACT
  CAGAAATCCA CCTGCTTCTG CCTCCGGCAG AATGCTGGGA TTAAAGGCTT GCGCCACCAT
  ACCCAGCCAG TTTAAGTCTT AATGCAGCAA GTTTCACTCA TGTCTTGTGC CTAACACTGA
  GGCAAATTAC CAAATGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788488	MGP_WTSI_11_69480117	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219090902					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788488	MGP_WTSI_11_69480117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69557441 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	462 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	321 bp downstream
Gm24029	predicted gene, 24029	1219 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	within coordinates
Tssr102512	transcription start site region 102512	979 bp downstream
Tssr102513	transcription start site region 102513	941 bp downstream
Tssr102514	transcription start site region 102514	911 bp downstream
Tssr102515	transcription start site region 102515	773 bp downstream
Tssr102516	transcription start site region 102516	122 bp downstream
Tssr102517	transcription start site region 102517	100 bp downstream
Tssr108752	transcription start site region 108752	1685 bp upstream
Tssr108753	transcription start site region 108753	1495 bp upstream
Tssr108754	transcription start site region 108754	1295 bp upstream
Tssr108755	transcription start site region 108755	1250 bp upstream
Tssr108756	transcription start site region 108756	1220 bp upstream
Tssr108757	transcription start site region 108757	1029 bp upstream
Tssr108758	transcription start site region 108758	790 bp upstream
Tssr108759	transcription start site region 108759	772 bp upstream
Tssr108760	transcription start site region 108760	710 bp upstream
Tssr108761	transcription start site region 108761	539 bp upstream
Tssr108762	transcription start site region 108762	466 bp upstream
Tssr108763	transcription start site region 108763	446 bp upstream
Tssr108764	transcription start site region 108764	610 bp downstream
Tssr108765	transcription start site region 108765	755 bp downstream