rs219091461 SNP Detail

Summary

• ID
  rs219091461
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25402068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGTGCC TTGAGGAAGA
  ACAGAGTGGA GTGTGAGGCT TTTCCCGTTA GTAAGTGGCT CCCGGTCACA GGAGGCTCCT
  GATTTTGTTC CATCCTGGGC TAGATTACAG CTCAGAGTAA GGGCATTTCC CAGGACCCTT
  TCTTTCCCAC AAAGCAGTAA ACATCCAAAA GCTATGGTCA CCTTCAGGAT GACAGAGTGT
  S
  CTTCCCCAGG TGGGAGACCT TGAGCAAAGA GCGGGCAAAA CCACCTGCAG GGAACAAGGC
  AAGTGAGTTT GCAGGCTGCT CCCAAATCCT GCAGTTGCAA CAGGTGTAAA TTTCCCCCCC
  AAGCTTCTGG ATCCAATTGA TATCAGACCC CTATTTCCCT GCATGGGGAG AAGTTCAAGT
  CCAGTCCCCC AGCAGAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397871693	MGP_WTSI_17_25320039	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219091461					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397871693	MGP_WTSI_17_25320039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25402068 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	519 bp downstream
Cpgi8755	CpG island 8755	909 bp proximal
Rr370183	regulatory region 370183	1246 bp upstream
Rr523507	regulatory region 523507	206 bp proximal
Rr523508	regulatory region 523508	313 bp proximal
Rr523509	regulatory region 523509	970 bp proximal
Tssr5037	transcription start site region 5037	1464 bp upstream
Tssr143142	transcription start site region 143142	1470 bp upstream
Tssr143143	transcription start site region 143143	1516 bp upstream
Tssr146818	transcription start site region 146818	1288 bp downstream
Tssr146819	transcription start site region 146819	1310 bp downstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	1467 bp upstream