rs219097381 SNP Detail

Summary

• ID
  rs219097381
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60234186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGCCAC TGTTCTTCCT
  TGAGTGAATA TGTTTGTTCT TGTCTCCCTC TACTGACCCC ACACTGAGGA AGGGCTTTGT
  GCAATGCCAT GTTACTACTC TCTGGCACAT AGCAGGGTTG TTTGCTTTTG TGTTGTTGTT
  TTGAGATTAG AGTTCAAAAA GTCCAGGCTG GACTTGAACT CTTGATCTTC CGGCCTCTAG
  A
  TCCCAAGTGC TGGATTACAG GAGGTCATCA CCACACCTGG CTTTTAATAT ATTTGCTGAA
  TGGAGATGTA AATGACTAAG TGGCCAGTCT CTGGTGAGGG ACTGAGTTGA CCCTCAGCAA
  GCACCGATAA AAGACGCGTG CAACATACAG CATCGAAACC TTCAGATCTT CTGCGAGCCC
  AGCTGTTTCC CCATTTTTAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325358	CHEV_10_59861155	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219097381					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60234186 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	1457 bp upstream
Rr215449	regulatory region 215449	within coordinates
Rr223077	regulatory region 223077	within coordinates
Rr228097	regulatory region 228097	616 bp proximal
Tssr93633	transcription start site region 93633	1342 bp upstream
Tssr93634	transcription start site region 93634	1395 bp upstream
Tssr93635	transcription start site region 93635	1442 bp upstream