rs219105624 SNP Detail

Summary

• ID
  rs219105624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142216784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGACCCAG AAAGACATGG
  AACAGTCATA TAAGACTTGG GATAGCATGG AAAGCCCTCT GCCACATAGA AGTTCATGCC
  TTACATCATT GCTCAGCCTG CTTTGGGGGC TTTAGTGAGA GAGTTTATAT TTTATATTTT
  AAAGAACCCT AACCATGGCC AGAATGCTTG CAGGAGCTCT AGGGAGCCCC AAAGCCTTGT
  R
  ACCAGTGTGT ATTCGTGGAA TTTTTTGGGG GGGGGTCTTG TTAAGTGAAT TTTAGATGTG
  ATTGGTGAAT GTACTCTTTC CATTTTCTGG AATCCGAGAA ATGAGAGTGA GGGCTATTTG
  AGGTGTCTAC ATTTAGGGGA GGACATAGAA AAAAAGGTTG GGACTTTGAA GGTGCCAGGA
  AAATTGTTAA AGCTGTCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471557	CHEV_7_149848952	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219105624					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142216784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19968	CpG island 19968	1612 bp distal
Cpgi19969	CpG island 19969	800 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr316	regulatory region 316	1197 bp proximal
Rr658254	regulatory region 658254	1753 bp distal
Rr658255	regulatory region 658255	1398 bp distal
Rr658256	regulatory region 658256	within coordinates
Tssr2465	transcription start site region 2465	1963 bp upstream
Tssr2466	transcription start site region 2466	1943 bp upstream
Tssr75893	transcription start site region 75893	1989 bp upstream
Tssr75894	transcription start site region 75894	1841 bp upstream
Tssr75895	transcription start site region 75895	1809 bp upstream
Tssr75896	transcription start site region 75896	1778 bp upstream
Tssr75897	transcription start site region 75897	1760 bp upstream
Tssr75898	transcription start site region 75898	1733 bp upstream
Tssr75899	transcription start site region 75899	1190 bp upstream
Tssr75900	transcription start site region 75900	1167 bp upstream
Tssr75901	transcription start site region 75901	1616 bp downstream
Tssr75902	transcription start site region 75902	1647 bp downstream
Tssr75903	transcription start site region 75903	1738 bp downstream