rs219107802 SNP Detail

Summary

• ID
  rs219107802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24926197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG CAGCGTCGGA GACTCTGCAA
  Y
  CAGTTAACCC ATCAACAGAG ATGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325333142	CHEV_17_24844168	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219107802					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24926197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	189 bp proximal
Rr405091	regulatory region 405091	329 bp upstream
Rr523395	regulatory region 523395	within coordinates
Rr523396	regulatory region 523396	427 bp proximal
Rr523397	regulatory region 523397	1437 bp proximal
Rr523398	regulatory region 523398	1639 bp proximal
Tbl3	transducin (beta)-like 3	within coordinates
Tssr146772	transcription start site region 146772	384 bp downstream
Tssr146773	transcription start site region 146773	394 bp downstream