rs219120031 SNP Detail

Summary

• ID
  rs219120031
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:26311754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAACA AAACAACAAA
  AACTAAATTA TAAACTACTT CAAACTGAAA AGTTTGCAGA CTTTTCAATC ATAATGCTCA
  TTATATAGGA AATATTAAAT TACAAGCCAT GCAGACATTT GCCTGTCTCT CAGTCTCAGC
  TTGGTGTGGG ATATAGGAGA TTCTGTAGCA AAAGAGAAAG CAAATAACCC CTCTCCTCCA
  M
  CACCAACACC ACCACCAACA CCAGCAACAA CAACAAATAA CCCCTCTCCT CCAACACCAA
  CACCAACACC AGCAACAACA ACAAATAACC CCTCTTTTCC AACACCAACA CCAACACCAG
  CAACAACAAC AAATAACCCC TCTCTTCCAA CACCAACACC AACACCAGCA ACAACAACAA
  ATAACCCCTC TCCTCCAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390595273	MGP_WTSI_14_27410085	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219120031					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390595273	MGP_WTSI_14_27410085	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26311754 () rs orientation: forward

Symbol	Name	Function Class
Dennd6a	DENN domain containing 6A	Intron
Gm62986	predicted gene, 62986	within coordinates
Rr489361	regulatory region 489361	835 bp proximal
Rr489362	regulatory region 489362	922 bp proximal
Rr489363	regulatory region 489363	1066 bp proximal
Tssr124682	transcription start site region 124682	447 bp downstream
Tssr124683	transcription start site region 124683	within coordinates
Tssr127790	transcription start site region 127790	968 bp downstream
Tssr127791	transcription start site region 127791	1023 bp downstream
Tssr127792	transcription start site region 127792	1040 bp downstream
Tssr127793	transcription start site region 127793	1069 bp downstream