rs219126900 SNP Detail

Summary

• ID
  rs219126900
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGGAAGC GGACTCGGGC
  TTGGTCCCCG GGGAGAAGGA ACGAGGGAGA AGGAGGGAGA AGGAAGGAGA AGGAAGGAGA
  AGGAAGGAGA AGGGAGAACC GGGGGCTGCG GGACTCGTGG AAGCCGGGAT GGGTCCCTCG
  ATGGCGGACG CCGACGCCAG GCAGCCCCGG GTGGAAGGGA GGAGGAGGAG GAGGAGAGAG
  A
  GACTTAGAGT CAGACAGAGG GACAGAGAGA GAGACTTAGA CACAGAGACA GAGAGACAGA
  GAGAGGCTCT GTCCCTGCAC TCCTACAGGT ACAACCTGGA GCAGCGGACG CGGACCTGAA
  CCCCCGTCTG CCCGGGGACG CCGCCGCCAC GGCCACACCG CTCGTCTGGA ACCACGGCTG
  GCCTTCGGGT CCCAGATCCG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CZECHII/EiJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	SEA/GnJ	SJL/J
ss370610656	MGP_WTSI_7_7230712	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CZECHII/EiJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	SEA/GnJ	SJL/J
rs219126900					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370610656	MGP_WTSI_7_7230712	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	within coordinates
Tssr64464	transcription start site region 64464	1 bp downstream
Tssr70610	transcription start site region 70610	28 bp downstream
Tssr70611	transcription start site region 70611	69 bp downstream