rs219127177 SNP Detail

Summary

• ID
  rs219127177
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGCCTCG TTTCATCCCT GTGCCGGTCT
  TAGTGAGAAG GGCTATaaga aagaaagaaa gaaagaaaga aagaaagaaa gaaagaaaga
  aagaaagaaa gaaagaaaga TCTTCTAACT AGCTCTGGTT GTTCCCAATT TTGCCTGGAG
  G
  AAAATGGACA ATCCACAGTG TAATCGCCTG CAGCTTTTAT CTCCGAAAGA TAAAGCTCTA
  AAGACTTTTA CCCTTCGGAG AGGCTTTACT CAACTGAAGG GCTATTTTTA AACCCACGCC
  GGAATCTTTC TTGAAGCAAC AGGACTTAAC                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342585	CHEV_2_72313629	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219127177					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305916 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	624 bp upstream
Cpgi11756	CpG island 11756	340 bp proximal
Rr397036	regulatory region 397036	194 bp upstream
Tssr18351	transcription start site region 18351	424 bp upstream
Tssr18352	transcription start site region 18352	601 bp upstream
Tssr18353	transcription start site region 18353	641 bp upstream
Tssr18354	transcription start site region 18354	653 bp upstream