rs219137398 SNP Detail

Summary

• ID
  rs219137398
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52221352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTCTCC TCCTGCTCCA
  AGCCTCATCG ACTGTATCCA CTACCACACG TCTTCTAAAT AAACTTTACC CTCTAACTGC
  AATGCCAACA CCTTCACGAT CTCTCTGGGA AATGAGTACC TTTCAGATCG CCTCCCAAAT
  GTCCACCTTT TGGACCAGTC TGTGACTCAG AGACAGGCAG GGCAACCCCT TGATGTGCTG
  M
  GGTTCCTCAA GCCTTTTTGA GAGACCCCAC TCGGCCTTCA CTTCCATGTA GAAGTGATAC
  TCGAGTTTGT AGGTGAGGCA AAAAAAAAAA AAAATTAAAG GAGCCTAGCC CCTTTTGTCT
  GAAGTGTAAG ATAATAGTCA CTGCCAAAAG CCCTAGCATA TGGGCCACTA TCGCCCTGCA
  ACAAGAAGGA AAGATCTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391101630	MGP_WTSI_14_52603570	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219137398					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391101630	MGP_WTSI_14_52603570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52221352 () rs orientation: forward

Symbol	Name	Function Class
Arhgef40	Rho guanine nucleotide exchange factor 40	824 bp upstream
Cpgi6430	CpG island 6430	489 bp proximal
Gm62631	predicted gene, 62631	119 bp downstream
Rr491846	regulatory region 491846	446 bp distal
Rr491847	regulatory region 491847	453 bp proximal
Rr491848	regulatory region 491848	1047 bp proximal
Tssr125437	transcription start site region 125437	593 bp upstream
Tssr125438	transcription start site region 125438	631 bp upstream
Tssr125439	transcription start site region 125439	801 bp upstream
Tssr125440	transcription start site region 125440	931 bp upstream
Tssr125441	transcription start site region 125441	962 bp upstream