rs219150428 SNP Detail

Summary

• ID
  rs219150428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4541199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACATTCG CACCACTTGT
  GGCTTCTGAC TATCTTCCAC AGAGGGAAGT TTAAAACCCA AACTTCCAAA GGTTTGAACT
  ACCTCAAGAC ACTTTGCAGT GAGTGTAGAC CATCCCAATG AGAGTTGACC AAGGCTGACA
  CGAACTGAGG TACTTGTTTT GTTTTGCTTG CAACACAAAG GTGCTAATTA GTAGTATTTC
  R
  GATACTTGAA GAATATGAAC GGTGCTGGAA GAATTACAGA AGAAACAATC CTCCACATTG
  ATGTGCATTG TGTGTGATTT TTAAATTTGA CTTAGCAGTC CTCTTTCTCA TCTTATCCCC
  AACTACAGGA ATGCAGGCCA CTTGCCCCAG GTTCTCTCTT CATTAGATTC AGCATTCATT
  CTTTAACAGC CTCATTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230186	MGP_WTSI_6_4491199	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219150428					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230186	MGP_WTSI_6_4491199	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4541199 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr54733	transcription start site region 54733	1725 bp downstream
Tssr54734	transcription start site region 54734	1708 bp downstream
Tssr54735	transcription start site region 54735	1697 bp downstream
Tssr54736	transcription start site region 54736	1671 bp downstream
Tssr54737	transcription start site region 54737	1654 bp downstream
Tssr54738	transcription start site region 54738	1611 bp downstream
Tssr54739	transcription start site region 54739	1599 bp downstream
Tssr54740	transcription start site region 54740	1522 bp downstream
Tssr54741	transcription start site region 54741	1183 bp downstream
Tssr54742	transcription start site region 54742	657 bp downstream
Tssr54743	transcription start site region 54743	626 bp downstream
Tssr54744	transcription start site region 54744	614 bp downstream
Tssr54745	transcription start site region 54745	608 bp downstream
Tssr54746	transcription start site region 54746	579 bp downstream
Tssr54747	transcription start site region 54747	528 bp downstream
Tssr54748	transcription start site region 54748	520 bp downstream
Tssr54749	transcription start site region 54749	347 bp downstream
Tssr54750	transcription start site region 54750	338 bp downstream
Tssr54751	transcription start site region 54751	324 bp downstream
Tssr54752	transcription start site region 54752	277 bp downstream
Tssr54753	transcription start site region 54753	253 bp downstream
Tssr54754	transcription start site region 54754	144 bp downstream
Tssr54755	transcription start site region 54755	238 bp upstream
Tssr59718	transcription start site region 59718	464 bp upstream
Tssr59719	transcription start site region 59719	367 bp upstream