rs219156559 SNP Detail

Summary

• ID
  rs219156559
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60960131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAATC ATTCTTGGTT
  CACAGAGTCA GATTCAACTA TAAGGTTACT ATTGGCTAAT CCTGCTCTAA AAACTCACTC
  ACCTACTGGG AGTCTGTCAT GGTATTTTAC TATTACTGTA TCCCACACAG TATCTGAGAT
  AAACAACAAC AACAACAACA ACAAAAATCT CATCTGTAAA CTTACCAGAA TCAGTCAAAA
  K
  CTCTCTGAGA TTGACCCTAG GACCTCCTTT ATGAATGCCA GATCCAGGTA AATATTCTAC
  CACTGAGCTA TATCCCAAGC CCTTCTTTAC TTTAATTTTG AGATAGTATG ACTAAGTTGC
  CAGGCTAGTC TTCAACTTTA TAGGCAAAGC AGCTCTCAAA CTTAATCCTC TTGCCTGAAC
  TTACTAAGTA GTGAGATTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327716	CHEV_10_60587100	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219156559					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60960131 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	785 bp downstream
Rr228136	regulatory region 228136	1931 bp distal
Sgpl1	sphingosine phosphate lyase 1	within coordinates