rs219157716 SNP Detail

Summary

• ID
  rs219157716
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8106250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGGTTCAG AAGTTTTCAT CAGGTTTTCA
  AAGTTTTTTT TTTCCTATTT TGTAAAGTGT CTCCTTCGCC CACTGGAATT GTTCTCCCCT
  TCCCTACAGT TGTGCATAGC GTTCTTATCC CGTCCTCTCT ACCCAACAAC CCGGTGTAAA
  K
  AGTAAATGTT CTACAAAATA GCACAGTAGG AAGAAGGGGG GAAAAAACCC TCCCCTAGCT
  GTGCGTGGAT GTCGGAATGT GCCACTAGGT CGAGAGGGAG AATGGGTCCT GATATAAACT
  CGTCTGGGGT CCTGGGTCAT CGCCCGAGTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321459852	CHEV_5_8056250	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219157716					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8106250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	within coordinates
Gm15730	predicted gene 15730	697 bp downstream
Sri	sorcin	within coordinates
Tssr45106	transcription start site region 45106	1136 bp downstream
Tssr45107	transcription start site region 45107	286 bp upstream
Tssr45108	transcription start site region 45108	305 bp upstream