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rs219164009 SNP Detail
Summary
  • ID
    rs219164009
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:8061578 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTTCATACA AGTTAGTGCT
GCCACCCCTG GAGTTGCCAG TTTTCCATGG TCCTGGGAAT CTATTCAAGT TTTTCCTCCC
AGATTTCAAG GGATTCAACA CTATTGACAA TATTTATATT CCAGCCATGG GCAACTTTAC
CTATGACTTT TCTTTTAAAT CAAGTGTCAT CACACTGAAT ACCAATGCTG GACTTTATAA
Y
CAATCAGATA TCGTTGCCCA TTTCCTTTCT TCCTCTTCAT TTGTCACTGA CGCCCTGCAG
TACAAATTAG AGGGAACATC ACGTCTGATG CGAAAAAGGG GATTGAAACT AGCCACAGCT
GTCTCTCTAA CTAACAAATT TGTAAAGGGC AGTCATGACA GCACCATTAG TTTAACCAAG
AAAAACATGG AAGCATCAGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385064718 MGP_WTSI_12_8018384 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219164009 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385064718 MGP_WTSI_12_8018384 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:8061578 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apob apolipoprotein B within coordinates
Tssr112660 transcription start site region 112660 1993 bp downstream
Tssr112661 transcription start site region 112661 1758 bp downstream
Tssr112662 transcription start site region 112662 1517 bp downstream
Tssr112663 transcription start site region 112663 1276 bp downstream
Tssr112664 transcription start site region 112664 1252 bp downstream
Tssr112665 transcription start site region 112665 1097 bp downstream
Tssr112666 transcription start site region 112666 1077 bp downstream
Tssr112667 transcription start site region 112667 1028 bp downstream
Tssr112668 transcription start site region 112668 892 bp downstream
Tssr112669 transcription start site region 112669 805 bp downstream
Tssr112670 transcription start site region 112670 749 bp downstream
Tssr112671 transcription start site region 112671 646 bp downstream
Tssr112672 transcription start site region 112672 64 bp downstream
Tssr112673 transcription start site region 112673 within coordinates
Tssr112674 transcription start site region 112674 68 bp upstream
Tssr112675 transcription start site region 112675 95 bp upstream
Tssr112676 transcription start site region 112676 198 bp upstream
Tssr112677 transcription start site region 112677 348 bp upstream
Tssr112678 transcription start site region 112678 472 bp upstream
Tssr112679 transcription start site region 112679 497 bp upstream
Tssr112680 transcription start site region 112680 516 bp upstream
Tssr112681 transcription start site region 112681 563 bp upstream
Tssr112682 transcription start site region 112682 576 bp upstream
Tssr112683 transcription start site region 112683 613 bp upstream
Tssr112684 transcription start site region 112684 657 bp upstream
Tssr112685 transcription start site region 112685 705 bp upstream
Tssr112686 transcription start site region 112686 753 bp upstream
Tssr112687 transcription start site region 112687 833 bp upstream
Tssr112688 transcription start site region 112688 934 bp upstream
Tssr112689 transcription start site region 112689 976 bp upstream
Tssr112690 transcription start site region 112690 1001 bp upstream
Tssr112691 transcription start site region 112691 1052 bp upstream
Tssr112692 transcription start site region 112692 1088 bp upstream
Tssr112693 transcription start site region 112693 1107 bp upstream
Tssr112694 transcription start site region 112694 1245 bp upstream
Tssr112695 transcription start site region 112695 1464 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory