rs219173322 SNP Detail

Summary

• ID
  rs219173322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:43446407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCTTTC ATTACAACTG
  ATCAGATTTT GGTAAGTGCA ATCTTTTACC TGGGAAAATG CAGCTAATAA ATAAAACCAC
  GAAGACGGAA TTTTCAAAAT TTCAAGCCTC AGTATAATTC GAGGACAAAA ATCAATTTCC
  ATCAACAAAC ACTAATCTTT AAAACTATTA TGGGCATGCC TCGTGAGTGT GACTTGATGC
  Y
  GTAGTCTTCT TTAAAAAGTT AAATTGAGCT TTATTTTATA TAACAATGGC CGAAGAGTGT
  TCAGGTGACC TGCACGCCAG CACATGACAT GTTCGTTTAC CCTTGTAAAA TTATACCATG
  CTAAATACAT GAGATATGAC ATTTGACAGT TATTATAAAC TAGGAGTTAA TGTCTTTATT
  TTCAAACGGA TCATGTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320267217	CHEV_2_43411915	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219173322					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43446407 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	Intron
Rr396942	regulatory region 396942	68 bp upstream
Rr556278	regulatory region 556278	1579 bp distal
Rr556279	regulatory region 556279	1031 bp distal
Rr556280	regulatory region 556280	within coordinates
Tssr17589	transcription start site region 17589	1057 bp downstream
Tssr17590	transcription start site region 17590	1040 bp downstream
Tssr17591	transcription start site region 17591	1028 bp downstream