rs219180335 SNP Detail

Summary

• ID
  rs219180335
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192342017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTTCCA AGACCCTGGT
  GTCCACGCCC AGCATGGGAG GTGAGGGGCT GCTGTTCCAA GTCCCTGGTG TCCACACTCA
  GCATGGGAGG TGAGGGGCTG CTGTTCCAAG ACCCTGGTGT CCACGCCCAG CCTGGGAGGT
  GAGAGGCTGC TGTTCCAAGA CCCTGGTGTC CACCCTCAGC ATAGGAGGTG AGGGGCTGCT
  S
  TTCCAAGTCC CTGGGTTCCA CGCCCAGCAC GGGAGGCAGG AGGCTGCTGT TCTTGGGCAT
  CTTCCCAGGC AGCCTTTTCT GATCTGCTTG CATGTGGAAT TCTTGTACCA TCTCTGCTGC
  GTCTATGGTT TCTTATCTTT CCTGCTATGT TTTTCTGACC CTTGCTGTAT CAAAAAGTTC
  ATACACTATC GTCTGTGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320199402	CHEV_1_194483591	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219180335					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192342017 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426372	regulatory region 426372			706 bp proximal
Rr426373	regulatory region 426373			1855 bp proximal