rs219183320 SNP Detail

Summary

• ID
  rs219183320
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117659158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCATTCTG TGGCCTTGAT
  AGAGATTGTA ACTAGATCTG CCCCTGGTCC TCATAGTTCA AAACTTCTTT ATGGTCCATT
  TTTAAGAGCT TTTTTGGTTT TTAGTTCATA TGACTATGTG TGAATGTGTG TGCATGTGTA
  GATGTGGAGG TGTCTATTGA GACGAGGGTG TCCTGGAGTT GAGGGTGCTT ACACGTCGTG
  C
  CGTGCCACAT GGGTGCTGGG GACCTCTGCA AGAGCAGCAA GCACTATTTA CCACTGATGC
  ATCCTGGTCT AATATGTTTT AGAAGCATAT TGACCTATTG TATTTGAAGG TACAAGTCCT
  ACATCTCAAA AGTAAGTAGA TGTGATGGTG TGTAATAAAA ATAAAGGCAG CTTTGTGTGT
  ATATGTAATT TTCAAATAAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	DBA/1J	DBA/2J	KK/HlJ	LP/J	MA/MyJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
ss359390934	MGP_WTSI_3_117568427	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	DBA/1J	DBA/2J	KK/HlJ	LP/J	MA/MyJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
rs219183320					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359390934	MGP_WTSI_3_117568427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117659158 () rs orientation: forward

Symbol	Name	Function Class
Rr583873	regulatory region 583873	145 bp proximal
Rr583874	regulatory region 583874	1389 bp proximal
Snx7	sorting nexin 7	Intron