rs219199626 SNP Detail

Summary

• ID
  rs219199626
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34884835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCACCTC CGTGCTCCGC
  CCCCAGCCCA GGCTCTTGGG CTCCTGAACT CGTCCCATCT CGGGTCCTCC CTGCCCTTCC
  CCAGCAAACT CTGAGGCCGC GATCGGGGGA AGGACCGGTG GCCCCGAGTG GCCTCATCCT
  CATGCAGGGG ACGGCGCGAC GCAGCTATCG CCAGCAACAC ACAAAAGCTG TTCCGCCGTC
  S
  GCCACACCGT GCCAGCCTCG CTCCGCCCGC CGCCCCGGTG GCCCCGACGC GGCCCTGCTC
  CCTCGCACCA CCCGCGCATG AATTTGCCCC GCGATCTGGG CTGCACCGCC CAATGGCTTC
  CGGGAGGAGG CAGGCTTCCC AGGATCCTGG GCCCGATACC TCCTTGCTAC CACAATTGTT
  CTCTTCCCGT CTCTCTGGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370970126	MGP_WTSI_7_35970429	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219199626					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370970126	MGP_WTSI_7_35970429	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34884835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	within coordinates
Gm38988	predicted gene, 38988	451 bp upstream
Rr645330	regulatory region 645330	within coordinates
Rr645331	regulatory region 645331	313 bp proximal
Rr645332	regulatory region 645332	558 bp proximal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	975 bp upstream
Tssr65893	transcription start site region 65893	948 bp upstream
Tssr65894	transcription start site region 65894	960 bp upstream
Tssr65895	transcription start site region 65895	999 bp upstream