rs219208252 SNP Detail

Summary

• ID
  rs219208252
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10783709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAGAATG GCCTTAAGAA
  AGTAACTCTG TCCTTTAATT TATTAATACA TCACACATAT CTTCAGTGTC ATTCTTTGCT
  TTTGTTTATG TTGGCATACT AACCCTAAGT TCAGAAATTA ACCTTCTTAA AAATCTATTT
  TATTGAGGTG GGGTGGGGAG GAGATGTGGG ATGTGGAACA GTTGGAGGGT AGAGGGGGGT
  K
  GGGGTGGGGA ATGGAATGTG GAGTGTAAAA AATAGATTAA AAATAAAATA AAATTTAAAA
  ATCTATTTTC TTGACTAAAT TCTATGCTGT TTTGAGTATA GATTGTTCTT ATTATAAGGT
  TAGTGATACA TTGATGTATG GTAGTTGGCT ATAATCCCTG AATTTTGAAT ATTAAAACCT
  ACCATGTGAT ACTTTAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399687747	MGP_WTSI_18_10783707	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219208252					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399687747	MGP_WTSI_18_10783707	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10783709 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	1216 bp downstream
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir1a-2	microRNA 1a-2	1772 bp downstream
Mir1b	microRNA 1b	1737 bp upstream
Mir133a-1	microRNA 133a-1	733 bp upstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2	1737 bp proximal
Rr533799	regulatory region 533799	1634 bp distal
Rr533800	regulatory region 533800	470 bp proximal
Rr533801	regulatory region 533801	1626 bp proximal
Rr533802	regulatory region 533802	1769 bp proximal
Tssr150041	transcription start site region 150041	1392 bp downstream
Tssr152436	transcription start site region 152436	797 bp upstream
Tssr152437	transcription start site region 152437	1769 bp downstream