rs219208328 SNP Detail

Summary

• ID
  rs219208328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96804195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGATTCA ACAGAATAAA
  TAGCAAGATC TGAGCTAATG AAATGACTGC CACCCTTCCC ACATCTGATG GCTAATTAAC
  AAGTTTGACA TTCCTATTTG AAATGTAATC TTATAGTCTG ATGGCCTACA GAGATATTTC
  TCATGGTAAA ACTATAGAGC AAAATGAAAA CTATTACCCA TAACAATCAG TCACAAAAAC
  Y
  AGACCCCGGG AGATGGGCCT GTGGATAATG CACTTGCATC TAAGCCTCAC TGCTTCTAAC
  ACTGCAGACT GAGCTCTGAC CGCCACGCTC AGGCCACAGT ACACACCAGT GCACACAAAC
  ACACACAATA GAATACAAAT GATGACAAGA AACCAACTAA CAGCCCACTG ATTGTCAGCA
  AGAATTCAAA TAGATCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ZALENDE/EiJ
ss389603522	MGP_WTSI_13_97437642	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ZALENDE/EiJ
rs219208328					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389603522	MGP_WTSI_13_97437642	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96804195 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	794 bp distal
Rr281795	regulatory region 281795	within coordinates
Rr285481	regulatory region 285481	1995 bp distal
Tssr123569	transcription start site region 123569	960 bp upstream