rs219211229 SNP Detail

Summary

• ID
  rs219211229
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3672934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAATTCC AGACTAGCCT
  GGGCTAGAGA CCTTGTCTCC ATAAAGGTTT CTTGTTGTTT GTGATGGTGT ATACCTACGG
  ACACTTGGAA GGAGGAGTAG GAGGAGTATC AGATTGAAGC TAGCCTGGGC TGCATGGGGA
  TAGAGAGAGG GAGACAGGAG AGGAAGCTGT AATTCCAGCA TTCCAGCACT CAGGAGATGG
  M
  TGCAAGAGGA TTGAGAATTC TGGCTATTCT CTGCCGCCTG GTGAGCTCAA GGCTAGCCTG
  TAGTATATGA GACCCCATCT TAAAAAGAGG GGAGGGCACA AATGGTGTCA CATATTACCT
  TTTCCCCGAG GGATGAAGCT GAACTCACTT GTACAGTGAT TGTGATTGGC ATGGGGCTCC
  CAGTGTGGAT ACTGAACTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373511975	MGP_WTSI_8_3622934	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219211229					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373511975	MGP_WTSI_8_3622934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3672934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20029	CpG island 20029	1215 bp distal
Pcp2	Purkinje cell protein 2 (L7)	437 bp downstream
Pet100	PET100 homolog	within coordinates
Rr400746	regulatory region 400746	1517 bp downstream
Rr658948	regulatory region 658948	1629 bp distal
Rr658949	regulatory region 658949	1322 bp distal
Rr658950	regulatory region 658950	1467 bp distal
Rr658951	regulatory region 658951	within coordinates
Tssr76075	transcription start site region 76075	1441 bp downstream
Tssr76076	transcription start site region 76076	1351 bp downstream
Tssr76077	transcription start site region 76077	1325 bp downstream
Tssr80202	transcription start site region 80202	1611 bp upstream
Tssr80203	transcription start site region 80203	576 bp downstream
Tssr80204	transcription start site region 80204	1635 bp downstream
Tssr80205	transcription start site region 80205	1725 bp downstream
Tssr80206	transcription start site region 80206	1987 bp downstream
Xab2	XPA binding protein 2	1623 bp upstream