rs219215677 SNP Detail

Summary

• ID
  rs219215677
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCATGCTT GCAAGGTAAG
  CTGTTTACCA ACTGAGTTCC TCAACATCCC CACCTCATTA TCATTCCTTA ATCACAGTGT
  ATCATGCTCT ATAAACGGGC CAGTCCTCAC AGTGATATTC ATTCCTGTTT GGCGAAGGGG
  ACATGGACGA CTGCTCTAAT TATACTTGCT TAACGCTTTC CCGGGTCCAA AGCACTTCAG
  W
  TATATCTGTG ACCATCACCA CAGACCTTAT ACTTTACAAA TGAGGAGATA GGCGTTACAG
  AGGGCCCAGC ATGAGCAAAG TGTGTATATC CAAGGAGCCT GGGCTACCTC CCTGCCTCTC
  TCTCCCAAAT TCCTTGTTTG CTGTTGGACA TCATTGCTCT CTATGGAGAA GAAAATGGCC
  ACCACTGCAA ACTGTTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss363530449	MGP_WTSI_4_141376427	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	T	T	A	A	T	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs219215677					SNP	A	A	A	A	T	T	A	A	T	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363530449	MGP_WTSI_4_141376427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547823 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1435 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	513 bp distal
Gm56298	predicted gene, 56298	within coordinates
Tssr40108	transcription start site region 40108	1468 bp downstream
Tssr40109	transcription start site region 40109	1433 bp downstream
Tssr40110	transcription start site region 40110	1410 bp downstream
Tssr40111	transcription start site region 40111	813 bp upstream
Tssr40112	transcription start site region 40112	841 bp upstream
Tssr40113	transcription start site region 40113	870 bp upstream
Tssr40114	transcription start site region 40114	1192 bp upstream
Tssr40115	transcription start site region 40115	1226 bp upstream
Tssr40116	transcription start site region 40116	1266 bp upstream
Tssr44374	transcription start site region 44374	1380 bp upstream
Tssr44375	transcription start site region 44375	1147 bp upstream
Tssr44376	transcription start site region 44376	1129 bp upstream
Tssr44377	transcription start site region 44377	520 bp upstream
Tssr44378	transcription start site region 44378	399 bp upstream
Tssr44379	transcription start site region 44379	840 bp downstream
Tssr44380	transcription start site region 44380	852 bp downstream
Tssr44381	transcription start site region 44381	1208 bp downstream
Tssr44382	transcription start site region 44382	1227 bp downstream
Tssr44383	transcription start site region 44383	1278 bp downstream
Tssr44384	transcription start site region 44384	1745 bp downstream
Tssr44385	transcription start site region 44385	1751 bp downstream
Tssr44386	transcription start site region 44386	1761 bp downstream