rs219218047 SNP Detail

Summary

• ID
  rs219218047
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37275540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAAAGTTA CCCAAGGGGC TCTCTATGTA
  GTTCAAGGAT CCTGGGAGTT GAGGAAGAAA AAGAATCTCT GTGCAAGCAA GAATGATCTT
  GCATAAGGGA CTGTAGTTTT CAGCCTTGCT GGCAGAGATG GGAGGGCTGG GAAGGCTGAC
  K
  ATTGAGAAGC AAGAGGAGGC AATGACACAG CATAGAAAGG CTTCCTCTTT CTCTGTTCCT
  TCCCTTCTTG TTAACTGAAG AGAATTTGTG TAGCCATTGT AGCTCTTAAA GGGAGTCTGG
  GGGTGGGGTG GGTGGCACAG AGGTACAGGA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325585075	CHEV_18_37302141	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219218047					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37275540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9898	CpG island 9898	798 bp proximal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha1	protocadherin alpha 1	within coordinates
Pcdha2	protocadherin alpha 2	within coordinates
Pcdha3	protocadherin alpha 3	within coordinates
Pcdha4	protocadherin alpha 4	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdha5	protocadherin alpha 5	within coordinates
Pcdha6	protocadherin alpha 6	within coordinates
Pcdha7	protocadherin alpha 7	within coordinates
Pcdha8	protocadherin alpha 8	within coordinates
Pcdha9	protocadherin alpha 9	within coordinates
Pcdha10	protocadherin alpha 10	within coordinates
Pcdha11	protocadherin alpha 11	within coordinates
Pcdha12	protocadherin alpha 12	within coordinates
Pcdhac1	protocadherin alpha subfamily C, 1	within coordinates
Pcdhac2	protocadherin alpha subfamily C, 2	1191 bp upstream
Rr536246	regulatory region 536246	583 bp proximal
Rr536247	regulatory region 536247	1127 bp proximal
Rr536248	regulatory region 536248	1255 bp proximal
Tssr150691	transcription start site region 150691	1177 bp upstream
Tssr150692	transcription start site region 150692	1227 bp upstream