rs219220287 SNP Detail

Summary

• ID
  rs219220287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97746501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGATTA TTCAATGTAA
  GCCTGGTGGT GGTGGAGGCA GCGCATGCCT TTGATCCTAG CACTTGGGAG GCAGAGGCAG
  GTGGATTTCT GAGTTCCAGG CCAGCCTGGT CTACAAAGTG AGTTCCAGGA CAGCCAGGGC
  TATACAGAGA AACCCTGTCT TAAAAACAAA ATAAAACAAA ACAAAAAAAC AACAACAACA
  M
  ACAAGATTAT CCAATGTAGA AAAGGGTCAG ACCAGACTTT TGGCTGCTAG TGTGAGACTG
  TTTCTGAATT ACCATGGGAG TCATATAAAA CTCCCAGCGT GAGTGTACAC TAGTGCATTA
  GAGCAGCTTA ACACACTAGC ATGAGTGTTG TTTGTCTGGT GACTAATTGA TAAAATAGCA
  AGTTAGGATA CATCTTAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323123523	CHEV_9_97764867	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219220287					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97746501 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr198247	regulatory region 198247	501 bp distal
Rr205510	regulatory region 205510	541 bp distal