rs219230856 SNP Detail

Summary

• ID
  rs219230856
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28803587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC TAGGTTCCGT GACTGAGGTA
  C
  GGGATTTGAA AGGCACCTGG ATTGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323609588	CHEV_11_28753587	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219230856					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28803587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2668	CpG island 2668	within coordinates
D11Mit172	DNA segment, Chr 11, Massachusetts Institute of Technology 172	836 bp distal
Efemp1	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	within coordinates
Gm34185	predicted gene, 34185	1079 bp upstream
Rr246450	regulatory region 246450	within coordinates
Tssr3451	transcription start site region 3451	171 bp upstream
Tssr3452	transcription start site region 3452	205 bp upstream
Tssr100686	transcription start site region 100686	328 bp downstream
Tssr100687	transcription start site region 100687	713 bp upstream