rs219235381 SNP Detail

Summary

• ID
  rs219235381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70441694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCCTCC TGTGCACATC
  AGGGCTCCAG AACACTCAGA GCCAGCGCTG GGGGAAATGG AAGGGAAAGC AGCAGATGGC
  AGCACCAGAG GACCTGCTTC TGCCCTGGGG GTGGTGCTGA GGTTTTTCTC CTGCACACCG
  ACCAATGCTC CTGTACCCAC AAGCTTGGCT TTGAAGGGAG GCTCCTTCCT GACTCAGAGC
  R
  TCTGCCTGAC AAGCCAGTCG GTTCTGCCTC ACCCGGGGGT CAGCAGAAGG GAGCTCGGGG
  CACCTGGGAG ATGGGTGAGC AAAAGGGCAC ACCCATAGAT GAGTGCAAGA GGACAGAGCA
  CTCATGGTTC AGGGGCACAA AGGGATTTTA GGGTCTAGAG AGCTGGGGTA TAGGATCTTC
  AGCTCTTCAT CTTTATGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391461205	MGP_WTSI_14_70604052	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219235381					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391461205	MGP_WTSI_14_70604052	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70441694 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6688	CpG island 6688			1382 bp proximal
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			1079 bp upstream
Rr494880	regulatory region 494880			115 bp distal
Rr494881	regulatory region 494881			368 bp proximal
Rr494882	regulatory region 494882			992 bp proximal
Rr494883	regulatory region 494883			1090 bp proximal
Rr494884	regulatory region 494884			1767 bp proximal
Rr494885	regulatory region 494885			1903 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			838 bp downstream
Tssr126404	transcription start site region 126404			926 bp upstream
Tssr126405	transcription start site region 126405			980 bp upstream
Tssr126406	transcription start site region 126406			999 bp upstream
Tssr129550	transcription start site region 129550			792 bp upstream
Tssr129551	transcription start site region 129551			779 bp upstream
Tssr129552	transcription start site region 129552			765 bp upstream
Tssr129553	transcription start site region 129553			1581 bp downstream
Tssr129554	transcription start site region 129554			1628 bp downstream
Tssr129555	transcription start site region 129555			1740 bp downstream
Tssr129556	transcription start site region 129556			1793 bp downstream
Tssr129557	transcription start site region 129557			1837 bp downstream
Tssr129558	transcription start site region 129558			1866 bp downstream